Rare coral species may be saving themselves from extinction by hybridising with other coral species, says Australian scientist Zoe Richards. Richards and his colleagues have studied 14 rare[1] and eight common coral species of the genus Acropora in the Indo-Pacific.

In order to find out more about hybridisation among corals, the team did a phylogenetic analysis using the highly polymorphic single-copy nuclear Pax-C 46/47 intron and the mitochondrial DNA (mtDNA) control region as markers.

The analysis showed that many of the rare species are polyphyletic for both Pax-C and mitochondrial phylogenies, and this is seen as a clear sign of interspecific hybridisation.

The results of the study “Some rare Indo-Pacific coral species are probable hybrids” by Richards, Oppen, Wallace, Willis and Miller were published in a recent issue of the journal PLoS ONE[2].

In their paper, the authors explain how “[t]he results presented here imply that a number of rare Indo-Pacific Acropora species are the products of recent hybridisation events, and highlight the significance of hybridisation in coral diversification. Whether these species have hybrid origins or have evolved and then hybridised in the absence of conspecific gametes remains to be elucidated.”

“In summary, although it has often been assumed that small populations have a decreased potential for adaptation, our analyses imply that some rare acroporid corals may actually have increased adaptive potential as a consequence of introgressive hybridisation, and therefore may be less vulnerable to extinction than has been assumed.”

A UK-Japan team equipped with remote-operated landers has now managed to film a shoal of Pseudoliparis amblystomopsis fish at a depth of 7.7 km (4.8 mi) in the Japan Trench, where the oceanic Pacific plate subducts beneath the continental Eurasian plate.

The deepest record for any fish – over 8 km / 5 mi – is held by the species Abyssobrotula galatheae, but this fish was never filmed or observed while it was alive; it was dredged from the bottom of the Puerto Rico Trench and already dead when it reached the surface.

The Pseudoliparis amblystomopsis film shows the fish darting around in the dark, scooping up shrimps. The shoal consists of no less than 17 specimens, with the largest ones being around 30 cm (12 in) in length.

“It was an honour to see these fish“, says Dr Alan Jamieson, Research Fellow at the University of Aberdeen, Scotland. “No-one has ever seen fish alive at these depths before – you just never know what you are going to see when you get down there.

The filming took place as a part of the Hadeep project; a collaboration between the Oceanlab at the University of Aberdeen and the Ocean Research Institute at the University of Tokyo. The aim of the project, which is funded by the Nippon Foundation and the Natural Environment Research Council, is to find out more about life in the very deepest parts of the world’s oceans.

Just like the unfortunate Abyssobrotula galatheae, deep sea fishes tend to be in a sad state when researchers examine them at the surface and this is one of the reasons why a film is such great news for anyone interested in learning more about what’s going on at these vast depts.

According to Professor Monty Priede, also from the University of Aberdeen, the team was surprised by the fish’s behaviour. “We certainly thought, deep down, fish would be relatively inactive, saving energy as much as possible, and so on,” says Priede. “But when you see the video, the fish are rushing around, feeding accurately, snapping at prey coming past.“

Oceanographers normally divide the deep sea into three different depth zones:

• The Bathyal, which is located between 1,000 and 3,000 m (3,000 and 10,000 ft)
• The Abyss, which is located between 3,000 and 6,000 m (10,000 and 20,000 ft)
• The Hadal, which is located between 6,000 and 11,000 m (20,000 and 36,000 ft)

The Hadeep project has been looking at the creatures inhabiting the Hadal zone, which consists of comparatively narrow trenches in the wide abyss. In this environment there is no light and the pressure is immense. The food supply is also very limited, since photosynthesising organisms can not survive and most other creatures stay away as well. The animals living in the Hadal zone must therefore rely on food sinking down to them from more fruitful waters above.

In order to cope with pressure, Hadal dwellers display numerous physiological modifications, primarily at the molecular level. They have also developed various ways of dealing with the constant night and Pseudoliparis amblystomopsis is for instance equipped with vibration receptors on its snout which comes in handy when the fish navigates through the darkness and searches for food.

Dr Alan Jamieson now hopes that the Japan-UK team will find more fish during their next expedition down into the Haldal zone, which is planned to take place in March 2009 and aims to venture as far down as 9,000 m (30,000 ft).”Nobody has really been able to look at these depths before – I think we will see some fish living much deeper,” says Jamieson, whose deep-sea blog from the expedition can be found at Planet Earth Online.

You can also read more about this story over at deep sea news, a great blog if you want to keep up to date on deep sea discoveries.

Hundreds of new animal species have been discovered by marine researchers studying Australian reefs as a part of the Census of Marine Life, an international effort to catalogue all life in the oceans. The findings include such curious creatures as tongue-eating isopod parasites living on fish and several new species of tanaid crustaceans, some with claws longer than their bodies. The team also found about 150 species of soft coral thought to be new to science, scores of tiny amphipod crustaceans of which an estimated 40 to 60% will be formally described for the first time, and dozens of small crustaceans likewise believed to be unknown to the scientific community. Researchers actually suspect that one or even several new families of species are to be found among the sampled crustaceans.

The investigated locales are the Lizard and Heron Islands (part of the Great Barrier Reef), plus the Ningaloo Reef off north-western Australia. All locations are considered well known and popular among scuba divers, and the research team was therefore quite surprised when they stumbled upon such a prolific collection of species unknown to science. This shows how little we still know about the species that inhabit our planet; even the ones living in habitats frequented by hundreds or even thousands of people each year.

Map of locations

“People have been working at these places for a long time and still there are literally hundreds and hundreds of new species that no one has ever collected or described,” says Julian Caley, a scientist from the Australian Institute of Marine Science who is helping to lead the research. “We were all surprised and excited to find such a large variety of marine life never before described – most notably soft coral, isopods, tanaid crustaceans and worms – and in waters that divers access easily and regularly. Compared to what we don’t know, our knowledge of marine life is a proverbial drop in the ocean. Inventorying the vast diversity and abundance of life across all ocean realms challenges both science and the imagination.”

In order to aid future explorations, researchers left several “houses” – formally known as Autonomous Reef Monitoring Structures (ARMS) – for marine creatures to colonize on the ocean floor. The houses consist of layered plastic structures and have been designed to appeal to a variety of sea life. Over the next one to three years, the houses will be collected and their tenants investigated.

See pictures of some of the creatures here

The Census of Marine Life (www.coml.org) is a global network of researchers in more than 80 nations engaged in a 10-year initiative to assess and explain the diversity, distribution, and abundance of marine life in the oceans – past, present, and future. The network will release the first Census of Marine Life in 2010.

As you probably know already, many sea living creatures are capable of emitting their own fluorescent light. Turning yourself into a living light bulb comes in handy when you live at depths where no sunlight or only very little sun light is capable of reaching you, and the glow can for instance be used for communication, as camouflage, or to lure in prey.

Up until now, most fish experts have assumed that marine fish living below a depth of 10 metres (30 feet) could not be red since the type of sunlight necessary for the colour red to be visible to the eye isn’t capable of travelling so far down into the ocean, and why would an animal develop a red pigmentation that nobody could see in its natural habitat?

New light has now been shed on the situation and – according to a study published on September 15 by researchers at the University of Tubingen in Germany – fish living at these depths have managed to circumvent the problem of light scarcity by emitting their own red fluorescent light instead of relying on sun beams to display their colours. According to the study, a lot of marine species are capable of emitting a fluorescent red light which can be seen even at depths below 10 meters.

“The general consensus, which dominated fish literature for 20 or 30 years, was that fish don’t see red very well or at all,” says Nico Michiels, one of the researchers behind the study. “We have been blinded, literally, by the blue-green light that is available on reefs in the daytime.”

The scuba diving research team made their discovery when looking through a filter that blocked out the brighter green and blue light waves. While using the filter – which leaves only red light waves – the scientists realised that their dive spot was inhabited by a long row if different marine creatures capable of emitting their own red light. In addition to fish, they saw fluorescent red coral, algae and other small organisms.

Further investigation revealed that the red glowing organisms use guanine crystals to produce their light. Guanine is one of the five main nucleobases found in DNA and RNA and guanine crystals are commonly used by the cosmetics industry to give products such as shampoo, eye shadows and nail polish a shimmering lustre. As early as 1656, a Parisian rosary maker named François Jaquin extracted crystalline guanine forming G-quadruplexes from fish scales – so called pearl essence. Guanine crystals are rhombic platelets composed of multiple transparent layers and the pearly lustre appears when light is partially reflected and transmitted from layer to layer.

The red fluorescent light emitted by the organisms studied by Michiels and his colleagues is only visible at a close distance, at least to us humans. More research is now needed to investigate why so many sea dwellers have developed this capacity and how the red colour benefits them in their daily life.